JOURNAL OF ANTİMİCROBİAL CHEMOTHERAPY

 

www.ankemdernegi.org.tr

JOURNAL OF ANTİMİCROBİAL CHEMOTHERAPY

MARCH 2012

 

 

Araştırma
ANKEM Derg 2012;26(1):1-9
MICROORGANISMS ISOLATED FROM VARIOUS CLINICAL SAMPLES AND THEIR ANTIBIOTIC SUSCEPTIBILITIES IN INTENSIVE CARE UNIT PATIENTS

Ayşe ERTÜRK1, Ayşegül ÇOPUR ÇİÇEK2, Ersin KÖKSAL3, Zeynep ŞENTÜRK KÖKSAL2,
Songül ÖZYURT4
1Rize Üniversitesi Tıp Fakültesi, Enfeksiyon Hastalıkları ve Klinik Mikrobiyoloji Anabilim Dalı, RİZE
2Rize 82.Yıl Devlet Hastanesi, Mikrobiyoloji ve Klinik Mikrobiyoloji Laboratuvarı, RİZE
3Rize 82.Yıl Devlet Hastanesi, Anesteziyoloji ve Reanimasyon Kliniği, RİZE
4Rize 82.Yıl Devlet Hastanesi, Göğüs Hastalıkları Kliniği, RİZE

SUMMARY

It is extremely important to identify the predominant infecting organisms and antibiotic resistance profiles in hospitals primarily departments at risk for infection such as intensive care units in terms of rational use of antibiotics and hospital infection control measures. In this study, it was aimed to determine the antibiotic resistance rates of microorganisms isolated from various clinical specimens of intensive care unit patients in our hospital between February 2010 and February 2011. Microorganisms were identified by conventional methods, antibiotic susceptibilities were determined by using Kirby-Bauer disk diffusion method and evaluated according to the Clinical and Laboratory Standards Institute (CLSI) recommendations. Growth was detected in 33 % out of 897 samples and 297 microorganisms consisting of 152 (51 %) Gram positive, 102 (34 %) Gram negative bacteria and 43 (14 %) Candida species were isolated. One hundred and thirty seven microorganisms were isolated from respiratory specimens, 87 from blood, 54 from urine and 19 from wound samples. The most frequently isolated Gram-negative bacteria  was Pseudomonas spp. (n=58, 38 %), followed by Escherichia coli (n=29; 19 %), Acinetobacter spp. (n=25; 16 %), Klebsiella spp. (n=22; 14 %), and other Gram-negative bacteria [(n=18; 12 %); 8 Citrobacter spp., 7 Enterobacter spp., 2 Proteus spp., 1 Serratia spp.]. The most effective antibiotics were amikacin and imipenem for E.coli, Klebsiella and other Enterobacteriaceae and cefepime for Pseudomonas and Acinetobacter spp. Among Gram positive bacteria 68 (67 %) were coagulase negative Staphylococcus (CNS), 19 were Staphylococcus aureus, 12 were Enterococcus spp. and 3 were Streptococcus pneumoniae. Methicillin resistance rate was 74 % in CNS and S.aureus. These data may contribute to making the appropriate empirical treatments and the measures for the intensive care unit infections.

Keywords: antibiotic susceptibility, intensive care unit, nosocomial infection

Araştırma
ANKEM Derg 2012;26(1):10-15
PNEUMOCOCCAL CARRIAGE AND PENICILLIN RESISTANCE AT A NURSING HOME AND CHILD CARE CENTER IN KAHRAMANMARAŞ

Zerife ORHAN1, Mustafa GÜL2, Murat ARAL2, Ali ÖZER3, Arzu KAYIŞ1
1Kahramanmaraş Sütçü İmam Üniversitesi, Sağlık Hizmetleri Meslek Yüksekokulu, KAHRAMANMARAŞ
2Kahramanmaraş Sütçü İmam Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, KAHRAMANMARAŞ
3İnönü Üniversitesi Tıp Fakültesi, Halk Sağlığı Anabilim Dalı, MALATYA

SUMMARY

The aims of this study were to determine the nasopharyngeal carriage and penicillin resistance rates of pneumococci among nursing home residents and children attending the daycare center, as risk groups, and to reveal the epidemiological relationship between carriers in Kahramanmaras.
            Ninety-five people over age 60, and 71 children between 0-12 years were included in the study. The demographic characteristics, as well as potential risk factors that may affect the carriage, were determined by questionnaire. S. pneumoniae strains isolated from nasopharyngeal samples were identified by standard methods. Penicillin resistance was investigated with oxacillin disk and penicillin minimal inhibitory concentration (MIC) values were investigated with the E-test method in oxacillin-resistant strains.
            In our study, nasopharyngeal S.pneumoniae carriage was detected in 7 out of 95 (7 %) elderly in nursing home and 18 out of 71 (25 %) children in day care center. Two strains isolated in nursing home and four strains isolated in child care center were found to be intermediate resistant to penicillin; high-level penicillin resistance was not detected. Pneumococcal carriage were associated with age groups in children (p = 0.03) and with gender (p = 0.04) in elderly.
            As a result, penicillin remains the drug of choice for the treatment of pneumococcal infections in our region.

Keywords: carriage, E-test, MIC, penicillin resistance, Streptococcus pneumoniae

Araştırma
ANKEM Derg 2012;26(1):16-19
RESISTANCE OF BURKHOLDERIA CEPACIA STRAINS ISOLATED FROM INTENSIVE CARE UNIT TO VARIOUS ANTIBIOTICS

Mehmet PARLAK, Aytekin ÇIKMAN, Hüseyin GÜDÜCÜOĞLU, Mustafa BERKTAŞ,
Abdullah BEKTAŞ
Yüzüncü Yıl Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, VAN

SUMMARY

Burkholderia cepacia is an important pathogen that particularly causes fatal infections in intensive care units. In this study, we aimed to determine the resistance rates to various antibiotics of B.cepacia strains isolated in intensive care unit of our hospital.
Forty-three B.cepacia strains isolated from various clinical specimens sent from intensive care unit were included in the study. After microorganisms had been identified as non-fermentative by conventional methods, BD Phoenix automated microbiology system (Becton Dickinson, USA) was utilized for species level identification and for antibiotic susceptibility tests. The distribution of isolated 43 B.cepacia strains according to the sample types was determined as 23 from blood, 12 from urine, 4 from tracheal aspirate, 4 from other specimens (wound, catheter). Resistance rates for antibiotics were as follows: 5 % for meropenem, 7 % for levofloxacin, 7 % for trimetoprime-sulfamethoxazole, 9 % for ceftazidime and 32 % for chloramphenicol.
As a result, obtained resistance rates for B.cepacia which is associated with high mortality in intensive care units, were found lower compared to the other studies. However, because of the limited number of antibiotics recommended by CLSI, B.cepacia infections should be carefully evaluated.

Keywords: antibiotic resistance, Burkholderia cepacia, intensive care unit


Araştırma
ANKEM Derg 2012;26(1):20-24
THE EVALUATION OF SUSCEPTIBILITY OF MYCOBACTERIUM TUBERCULOSIS COMPLEX ISOLATES AGAINST PRIMER ANTITUBERCULOSIS DRUGS

Yasemin ÖZ1, Müge ASLAN1, Filiz AKŞİT1, Gül DURMAZ1, Nuri KİRAZ2
1Osmangazi Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, ESKİŞEHİR
2İstanbul Üniversitesi Cerrahpaşa Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, İSTANBUL

SUMMARY

Mycobacterium tuberculosis complex (MTC) is one of the most reasons of death caused by infections in the world and primer antituberculosis agents for treatment are isoniazide (INH), rifampicin (RIF), pyrazinamide (PZA), ethambutol (ETM), streptomycin (SM) and tiasetazon (T). However antituberculosis drug resistance is an important problem and less than 5 % of new tuberculosis patients were found to be multidrug resistant-MTC in most countries. We tested the antituberculosis susceptibility of 284 MTC isolates in 2004-2011 years. Fifty isolates (17.6 %) were detected as resistant to at least one drug. While the highest rate (8.5 %) of mono drug resistance was obtained with INH, the number of MDR-MTC isolates was found 13 (4.6 %). Total resistance rates of INH, RIF, SM and ETM were 14.4 %, 7 %, 2.1 % ve 2.8 %, respectively. MDR-MTC isolates have the important effects on the treatment, because it can be required less effective, more expensive and more toxic drugs for treatment. Consequently, tuberculosis is still an actual problem and emerging drug resistance effects the treatment programs as negative.

Keywords: antituberculosis drug, Mycobacterium tuberculosis, resistance, susceptibility

Araştırma
ANKEM Derg 2012;26(1):25-29
INVESTIGATION OF ROTAVIRUS FREQUENCY AND FOLLOWING UP THE ROTAVIRUS SEASON AMONG CHILDREN WITH ACUTE GASTROENTERITIS: EVALUATION OF FIVE-YEAR RESULTS

Mehmet İLKTAÇ, Ayşegül ŞAHİN, Hasan NAZİK, Betigül ÖNGEN
İstanbul Üniversitesi İstanbul Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, İSTANBUL

SUMMARY

Rotavirus antigen was investigated in 11,711 stool samples from children with acute gastroenteritis between the years 2006 to 2010 and rotavirus antigen was detected in 1818 (15.5 %) samples. Antigen positivity rates were 19.2 %, 14.5 %, 17.3 %, 16.6 % and 11 % in 2006, 2007, 2008, 2009 and 2010, respectively. Rotavirus antigen positivity was detected to be highest in children between 1-2 years old. It was found that rotavirus season started in December, ended in May, positivity reached the highest rate in January and February and that rotavirus frequency is higher in winter than other seasons.
            Although the frequency is relatively decreasing, rotavirus infections remain among the important childhood diseases in our region. Therefore, it is important to follow up the epidemiology of rotavirus infections.

Keywords: children, gastroenteritis, rotavirus, season


Araştırma
ANKEM Derg 2012;26(1):30-34
THE AGE AND GENDER DISTRIBUTION OF HELICOBACTER PYLORI PREVALENCE IN VAN REGION

Aytekin ÇIKMAN, Mehmet PARLAK, Hüseyin GÜDÜCÜOĞLU, Mustafa BERKTAŞ
Yüzüncü Yıl Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, VAN

SUMMARY

In this study, we aimed to determine the prevalence of H. pylori antigens and distribution according to age and gender groups in fresh stool samples sent to our laboratory with stool antigen test request.
Results of 8402 stool specimens obtained from different patients and sent to the laboratory with H.pylori stool antigen test request between January 2006 and December 2010, were retrospectively evaluated. For each patient, only the first result was included in the study. Statistical differences between H.pylori stool antigen positivity rates in different age, gender and child-adult groups were determined using Z proportion test. 4304 (51 %) of examined stool samples belonged to children and 4098 (49 %) to adult patients. Positivity rates of H.pylori antigen in children, adults group and in total were 20.7 %, 25.5 % and 23 %, respectively. Higher rate seen in adult patients compared to children group was found statistically significant (p<0.001). Whereas statistically significant difference between genders in children group was not observed, in adult group women’s H.pylori positivity rate was found significantly higher (p<0.05). H.pylori antigen frequencies distribution by age groups showed increase in H. pylori antigen prevalence parallel to age increase, with the highest values in 26-35 age group, drawing a plateau in the subsequent age groups and showing decrease in group above 56 years.
As a result, the high prevalence of H. pylori and increase of prevalence parallel to age are significant facts. Commonly seen bacterium H.pylori with its well known relationship with gastric cancer and required eradication after diagnosis, is a major public health problem in our region.

Keywords: age, Helicobacter pylori, prevalence, stool antigen test


ANKEM Derg 2012;26(1):35-41
THE PREVALENCE OF AUTOANTIBODIES IN PATIENTS WITH CHRONIC HEPATITIS C AND THE RELATIONSHIP BETWEEN AUTOANTIBODIES AND HCV RNA POSITIVITY

Işıl FİDAN1, Turgut İMİR1, Seyyal ROTA1, Resul KARAKUŞ2, Hülya DURAN1, Melek ERTAŞ1, Zübeyde LALE1
1Gazi Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, ANKARA
2Gazi Üniversitesi Tıp Fakültesi, İmmünoloji Anabilim Dalı, ANKARA

SUMMARY

The prevalence of autoantibodies positivity in serum samples of patients with chronic hepatitis C infection, and the relationship between the presence of autoantibodies and HCV RNA positivity were investigated. Serum samples of 121 anti-HCV positive and 68 anti-HCV negative patients were included in this study. Serum ANA, ASMA, AMA, LKM were detected by indirect immunofluorescence assay. HCV RNAs were detected by using quantitative real-time polymerase chain reaction.
There was no significant differences in positivite for at least one autoantibodies between anti-HCV positive and anti-HCV negative samples. The positivity of ANA was found to be higher among anti-HCV negative samples compared to the anti-HCV positive samples. A significantly higher incidence of AMA were seen in HCV RNA positive samples. The HCV viral load was significantly lower in the autoantibody positive samples with HCV RNA positive.
In conclusion, although autoantibodies are commonly found among patients with chronic hepatitis C infection, the relationship between autoantibodies production and HCV infection is still controversial. More studies are required to understand the autoimmune mechanisms in chronic hepatitis C infection.

Keywords: autoantibodies, chronic hepatitis C infection, viral load

Olgu sunumu
ANKEM Derg 2012;26(1):42-45
A CASE OF ASPERGILLUS FUMIGATUS SPONDYLODISCITIS TREATED BY VORICONAZOLE

Selin BARDAK-ÖZCEM1, Derya ÇAĞLAYAN-SERİN1, Serhat UYSAL1, Sedat ÇAĞLI2, Hüsnü PULLUKÇU1, Meltem IŞIKGÖZ-TAŞBAKAN1, Bilgin ARDA1, Tansu YAMAZHAN1,Dilek METİN3,
Sercan ULUSOY1, Oğuz Reşat SİPAHİ1
1Ege Üniversitesi Tıp Fakültesi, İnfeksiyon Hastalıkları ve Klinik Mikrobiyoloji Anabilim Dalı, İZMİR
2Ege Üniversitesi Tıp Fakültesi, Nöroşirurji Anabilim Dalı, İZMİR
3Ege Üniversitesi Tıp Fakültesi, Mikrobiyoloji ve Klinik Mikrobiyoloji Anabilim Dalı, İZMİR

SUMMARY

Aspergillus spp., which is widely distributed throughout the earth is an important opportunistic mold. Aspergillus fumigatus is the most common cause of invasive aspergillosis. It is a rare cause of spondylitis in the immunocompromised host. In this paper, we report a case of A. fumigatus spondylodiscitis, which developed in a patient with amyloidosis, nephrotic syndrome and history of steroid consumption, treated with voriconazole.

Keywords: Aspergillus fumigatus, discitis, spondylitis, spondylodiscitis, voriconazole


Derleme
ANKEM Derg 2012;26(1):46-54
SQUALENE: THE CONTROVERSIAL ADJUVANT

Görkem YAMAN1, Mustafa BERKTAŞ2, Hüseyin GÜDÜCÜOĞLU2
1Acıbadem Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, İSTANBUL
2Yüzüncü Yıl Üniversitesi Tıp Fakültesi, Tıbbi Mikrobiyoloji Anabilim Dalı, VAN

SUMMARY

Although influenza vaccination is announced to be the most effective prevention method for the outbreak of 2009 pandemic influenza A H1N1 virus, especially the speculations for vaccine ingredient squalene and its adverse effects have suppressed its effectiveness and caused controversy. Squalene, a natural organic lipid which belongs to triterpene class of terpenoids, is used for medical purposes, besides dietary supplement and in cosmetics industry, as oil-in-water emulsion vaccine adjuvant because of being degradable oil and its biological origin.
Formulations of squalene with tween 80 and span 85 which are ingredients of influenza vaccines, have proved to induce potent humoral responses as well as cellular immune responses and their effectiveness to be more potent and long lasting than alum which is an adjuvant used in vaccines for more than 70 years. In a series of studies on adverse effects of squalene, although local and short term adverse effects were detected to be more frequent compared to non-adjuvanted vaccines, there were no significant differences in terms of unexpected or serious adverse effects.
After it was reported that squalene was included in multi-vaccination program and there was a significant correlation with anti-squalene antibodies and chronic multisymptomatic illnesses (Gulf war syndrome) in American veterans during the Gulf war, the adequacy of these reports and validations of the performed methods were extensively questioned. As a result of recent reports using validated methods and control groups, the claimed correlation between squalene antibodies and the illness could not be confirmed.
In this review, squalene which has a bright future in drug and gene transfer as well as vaccine applications is examined into with the light of recent publications.

Keywords: influenza A virus H1N1, influenza vaccines, MF59 oil emulsion, Persian gulf syndrome, squalene

 

 

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